SRX062993
GSM723017: RenLab-H3K4me3-mESC

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Bruce4 embryonic stem cells
strain
C57BL/6
chip antibody
H3K4me3
chip antibody details
Millipore, 05-745

Sequenced DNA Library

library_name
GSM723017: RenLab-H3K4me3-mESC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37305345
Reads aligned (%)
87.1
Duplicates removed (%)
21.2
Number of peaks
62026 (qval < 1E-05)

mm9

Number of total reads
37305345
Reads aligned (%)
87.0
Duplicates removed (%)
21.3
Number of peaks
62003 (qval < 1E-05)

Base call quality data from DBCLS SRA