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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Spleen
ATCC
MeSH
RIKEN BRC
SRX062985
GSM723003: RenLab-Input-spleen (Illumina HiSeq 2000)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.
Attributes by original data submitter
Sample
source_name
Mouse spleen
strain
C57BL/6
chip antibody
none (Input)
chip antibody details
None
Sequenced DNA Library
library_name
GSM723003: RenLab-Input-spleen (Illumina HiSeq 2000)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29605854
Reads aligned (%)
66.9
Duplicates removed (%)
12.7
Number of peaks
742 (qval < 1E-05)
mm9
Number of total reads
29605854
Reads aligned (%)
66.8
Duplicates removed (%)
12.8
Number of peaks
842 (qval < 1E-05)
Base call quality data from
DBCLS SRA