SRX062955
GSM722693: RenLab-H3K4me1-heart

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Cardiovascular
Cell type
Heart
MeSH Description
The hollow, muscular organ that maintains the circulation of the blood.

Attributes by original data submitter

Sample

source_name
Mouse heart
strain
C57BL/6
chip antibody
H3K4me1
chip antibody details
Abcam, ab8895

Sequenced DNA Library

library_name
GSM722693: RenLab-H3K4me1-heart
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
56006170
Reads aligned (%)
81.2
Duplicates removed (%)
8.1
Number of peaks
60097 (qval < 1E-05)

mm9

Number of total reads
56006170
Reads aligned (%)
81.2
Duplicates removed (%)
8.1
Number of peaks
60153 (qval < 1E-05)

Base call quality data from DBCLS SRA