SRX062940
GSM722632: RenLab-H3K4me1-cortex

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Neural
Cell type
Brain cortex
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse cortex
strain
C57BL/6
chip antibody
H3K4me1
chip antibody details
Abcam, ab8895

Sequenced DNA Library

library_name
GSM722632: RenLab-H3K4me1-cortex
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
65468414
Reads aligned (%)
68.8
Duplicates removed (%)
4.0
Number of peaks
41949 (qval < 1E-05)

mm9

Number of total reads
65468414
Reads aligned (%)
68.8
Duplicates removed (%)
4.0
Number of peaks
42236 (qval < 1E-05)

Base call quality data from DBCLS SRA