SRX062363
GSM699637: PolII ChIP sequencing in DHT (5alpha-dihydrotestosterone) treated LNCaP cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP prostate cancer cells
cell line
LNCaP androgen-dependent prostate cancer cell line
agent
DHT
chip antibody
PolII antibody
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM699637: PolII ChIP sequencing in DHT (5alpha-dihydrotestosterone) treated LNCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29702931
Reads aligned (%)
47.3
Duplicates removed (%)
8.4
Number of peaks
16798 (qval < 1E-05)

hg19

Number of total reads
29702931
Reads aligned (%)
47.0
Duplicates removed (%)
8.7
Number of peaks
16821 (qval < 1E-05)

Base call quality data from DBCLS SRA