SRX062359
GSM699633: NKX3-1 ChIP sequencing in DHT (5alpha-dihydrotestosterone) treated LNCaP cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX3-1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP prostate cancer cells
cell line
LNCaP androgen-dependent prostate cancer cell line
agent
DHT
chip antibody
NKX3-1 antibody
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM699633: NKX3-1 ChIP sequencing in DHT (5alpha-dihydrotestosterone) treated LNCaP cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14240081
Reads aligned (%)
91.3
Duplicates removed (%)
6.6
Number of peaks
2518 (qval < 1E-05)

hg19

Number of total reads
14240081
Reads aligned (%)
90.5
Duplicates removed (%)
7.9
Number of peaks
2534 (qval < 1E-05)

Base call quality data from DBCLS SRA