SRX057756
GSM703187: Sox2 ChIP-seq, Oct3/4KO Day1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Sox2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ZHBTc4
NA
NA

Attributes by original data submitter

Sample

source_name
ZHBTc4 ES cells, +Tet, Day 1
strain
129/Ola
cell line
ZHBTc4
treatment
Tet
time
1 day
chip antibody
Sox2 produced in-house
condition
On MEF feeders, with FGF4/heparin/Activin A

Sequenced DNA Library

library_name
GSM703187: Sox2 ChIP-seq, Oct3/4KO Day1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15564471
Reads aligned (%)
97.7
Duplicates removed (%)
17.2
Number of peaks
1210 (qval < 1E-05)

mm9

Number of total reads
15564471
Reads aligned (%)
97.4
Duplicates removed (%)
17.3
Number of peaks
1170 (qval < 1E-05)

Base call quality data from DBCLS SRA