SRX057746
GSM706676: mES Input Luc shRNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES cells, Luc shRNA, input
cell line
E14
cell type
mouse embryonic stem (MES) cells
shrna treatment
Luc shRNA
antibody
none

Sequenced DNA Library

library_name
GSM706676: mES_Input_Luc_shRNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14930839
Reads aligned (%)
97.0
Duplicates removed (%)
11.3
Number of peaks
34706 (qval < 1E-05)

mm9

Number of total reads
14930839
Reads aligned (%)
96.8
Duplicates removed (%)
11.5
Number of peaks
34774 (qval < 1E-05)

Base call quality data from DBCLS SRA