SRX055316
GSM700781: HL1 input gDNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
HL-1
NA
NA

Attributes by original data submitter

Sample

source_name
input DNA
strain
C57BL/6
cell line
HL-1 cells
cell type
cardiac muscle cell line
chip antibody
none

Sequenced DNA Library

library_name
GSM700781: HL1_input_gDNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24760628
Reads aligned (%)
97.7
Duplicates removed (%)
10.4
Number of peaks
550 (qval < 1E-05)

mm9

Number of total reads
24760628
Reads aligned (%)
97.5
Duplicates removed (%)
10.5
Number of peaks
662 (qval < 1E-05)

Base call quality data from DBCLS SRA