Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

MCF-7

Primary Tissue

Breast

Site of Extraction

Pleura

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

input DNA

cell line

MCF7

cell type

breast adenocarcinoma cells

cell differnetiation protocol

MCF7 [ER-treated]

cell treatment

Cells were hormone-deprived for at least 3 days and then treated with 100 nM 17β-estradiol (Sigma) for 45 minutes.

chip antibody

none

Sequenced DNA Library

library_name

GSM700759: MCF7_input_gDNA

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

26304471

Reads aligned (%)

97.8

Duplicates removed (%)

1.6

Number of peaks

744 (qval < 1E-05)

hg19

Number of total reads

26304471

Reads aligned (%)

97.0

Duplicates removed (%)

3.0

Number of peaks

1069 (qval < 1E-05)