SRX054580
GSM651192: Dpy-30 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Dpy30

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell type
E14 ES cells
chip antibody
anti-Dpy-30
antibody provider
unreleased product from Bethyl Laboratories, developed by Christina Hughes (David Allis lab, Rockefeller University) through Bethyl

Sequenced DNA Library

library_name
GSM651192: Dpy-30_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39058611
Reads aligned (%)
78.1
Duplicates removed (%)
29.9
Number of peaks
14740 (qval < 1E-05)

mm9

Number of total reads
39058611
Reads aligned (%)
78.0
Duplicates removed (%)
30.0
Number of peaks
14763 (qval < 1E-05)

Base call quality data from DBCLS SRA