SRX054576
GSM699989: HA ER E2F1ΔMB MCF7 stables ChIP-seq rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cell line
cell type
MCF7 cell line stably expressing HA ER E2F1 5'NLS ΔMB mutant
harvest date
2010-07-26
chip antibody
mouse anti-HA (Covance, catalog # MMS-101P)

Sequenced DNA Library

library_name
GSM699989: HA ER E2F1ΔMB_MCF7 stables_ChIP-seq_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45005925
Reads aligned (%)
37.9
Duplicates removed (%)
5.0
Number of peaks
23518 (qval < 1E-05)

hg19

Number of total reads
45005925
Reads aligned (%)
37.6
Duplicates removed (%)
6.0
Number of peaks
23537 (qval < 1E-05)

Base call quality data from DBCLS SRA