Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR1H3

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells
cell_line
THP-1
treatment
T09
antibody
LXR

Sequenced DNA Library

library_name
GSM700470: LXR ChIP-seq T09 treated
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
18304931
Reads aligned (%)
84.6
Duplicates removed (%)
12.7
Number of peaks
1091 (qval < 1E-05)

hg38

Number of total reads
18304931
Reads aligned (%)
87.1
Duplicates removed (%)
11.0
Number of peaks
895 (qval < 1E-05)

Base call quality data from DBCLS SRA