Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
alr-1
Cell type Class
Larvae
Cell type
L2

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_ALR-1_GFP_L2_rep1 extraction5_seq5 channel_1
strain
OP200(official name : OP200 genotype : unc119(ed3);wgIs200(alr-1::TY1 EGFP FLAG C;unc119) outcross : 3 mutagen : Bombard tags : GFP::3xFlag description : his strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The ALR-1::EGFP fusion protein is expressed in the correct alr-1 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the ALR-1 transcription factor. made_by : R. Waterston )
developmental stage
L2
genotype
unc119(ed3);wgIs200(alr-1::TY1 EGFP FLAG C;unc119)
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM700167: Snyder_ALR-1_GFP_L2_rep1 extraction5_seq5 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
2829693
Reads aligned (%)
27.9
Duplicates removed (%)
3.9
Number of peaks
390 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA