SRX047652
GSM686983: Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
Preadipocyte cell line
cell line
3T3-L1 preadipocyte cell line
dnase treatment
n/a
chip antibody
n/a

Sequenced DNA Library

library_name
GSM686983: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16219459
Reads aligned (%)
96.8
Duplicates removed (%)
10.7
Number of peaks
245 (qval < 1E-05)

mm9

Number of total reads
16219459
Reads aligned (%)
96.6
Duplicates removed (%)
10.8
Number of peaks
496 (qval < 1E-05)

Base call quality data from DBCLS SRA