SRX047650
GSM686981: RNA Pol II ChIP-seq day 0

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
Preadipocyte cell line
cell line
3T3-L1 preadipocyte cell line
differentiation stage
Preadipocyte
time
day 0
chip antibody
RNA Pol II

Sequenced DNA Library

library_name
GSM686981: RNA Pol II ChIP-seq day 0
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16959525
Reads aligned (%)
94.8
Duplicates removed (%)
34.7
Number of peaks
6379 (qval < 1E-05)

mm9

Number of total reads
16959525
Reads aligned (%)
94.7
Duplicates removed (%)
34.9
Number of peaks
6408 (qval < 1E-05)

Base call quality data from DBCLS SRA