SRX047638
GSM686966: DHS-seq 4 hours

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
Preadipocyte cell line
cell line
3T3-L1 preadipocyte cell line
differentiation stage
Early stage
time
4 hours
dnase treatment
DNase I treated

Sequenced DNA Library

library_name
GSM686966: DHS-seq 4 hours
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17863629
Reads aligned (%)
95.9
Duplicates removed (%)
21.3
Number of peaks
19617 (qval < 1E-05)

mm9

Number of total reads
17863629
Reads aligned (%)
95.7
Duplicates removed (%)
21.4
Number of peaks
19635 (qval < 1E-05)

Base call quality data from DBCLS SRA