Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm1a

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
Lsd1
antibody catalog number
Abcam AB17721
antibody lot number
959450
cell type
V6.5 embryonic stem cells

Sequenced DNA Library

library_name
GSM687281: ChIP-Seq for Lsd1 in mES cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
6245340
Reads aligned (%)
75.1
Duplicates removed (%)
6.0
Number of peaks
2237 (qval < 1E-05)

mm9

Number of total reads
6245340
Reads aligned (%)
74.9
Duplicates removed (%)
6.3
Number of peaks
2229 (qval < 1E-05)

Base call quality data from DBCLS SRA