SRX047139
GSM687280: HDAC2 mES biological replicate

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hdac2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embyonic stem cells
chip antibody
HDAC2
antibody catalog number
Abcam AB7029
antibody lot number
769177
cell type
V6.5 embryonic stem cells

Sequenced DNA Library

library_name
GSM687280: HDAC2 mES biological replicate
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41464833
Reads aligned (%)
71.4
Duplicates removed (%)
76.3
Number of peaks
2510 (qval < 1E-05)

mm9

Number of total reads
41464833
Reads aligned (%)
71.3
Duplicates removed (%)
76.4
Number of peaks
2572 (qval < 1E-05)

Base call quality data from DBCLS SRA