SRX047080
GSM686942: LNCaP-H2A.Z-dht-siFoxA1-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate cancer cell line (LNCaP)
cell line
LNCaP
sirna transfection
siFoxA1 (M-010319)
agent
DHT
chip antibody
H2A.Z
chip antibody vendor
Abcam
transgenes
none

Sequenced DNA Library

library_name
GSM686942: LNCaP-H2A.Z-dht-siFoxA1-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17169634
Reads aligned (%)
63.1
Duplicates removed (%)
1.2
Number of peaks
476 (qval < 1E-05)

hg19

Number of total reads
17169634
Reads aligned (%)
62.5
Duplicates removed (%)
1.9
Number of peaks
739 (qval < 1E-05)

Base call quality data from DBCLS SRA