SRX047072
GSM686934: LNCaP-H3K4me2-dht-siFoxA1-Mnase-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate cancer cell line (LNCaP)
cell line
LNCaP
sirna transfection
siFoxA1 (M-010319)
agent
DHT
mnase digestion
yes
chip antibody
H3K4me2
chip antibody vendor
Upstate
transgenes
none

Sequenced DNA Library

library_name
GSM686934: LNCaP-H3K4me2-dht-siFoxA1-Mnase-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11308194
Reads aligned (%)
84.0
Duplicates removed (%)
3.7
Number of peaks
6983 (qval < 1E-05)

hg19

Number of total reads
11308194
Reads aligned (%)
83.6
Duplicates removed (%)
4.2
Number of peaks
6956 (qval < 1E-05)

Base call quality data from DBCLS SRA