SRX047070
GSM686932: LNCaP-H3K4me2-dht-siCTRL-Mnase-ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate cancer cell line (LNCaP)
cell line
LNCaP
sirna transfection
siCTRL (1027280)
agent
DHT
mnase digestion
yes
chip antibody
H3K4me2
chip antibody vendor
Upstate
transgenes
none

Sequenced DNA Library

library_name
GSM686932: LNCaP-H3K4me2-dht-siCTRL-Mnase-ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
14372137
Reads aligned (%)
85.0
Duplicates removed (%)
5.4
Number of peaks
18485 (qval < 1E-05)

hg19

Number of total reads
14372137
Reads aligned (%)
84.6
Duplicates removed (%)
5.9
Number of peaks
18406 (qval < 1E-05)

Base call quality data from DBCLS SRA