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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: VDR
wikigenes
PDBj
CellType: THP-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX045434
GSM678268: VDR ChIP-seq vehicle
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
VDR
Cell type
Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
THP-1 cells
cell line
THP-1
treatment
unstimulated
antibody
VDR
Sequenced DNA Library
library_name
GSM678268: VDR ChIP-seq vehicle
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
55983868
Reads aligned (%)
22.5
Duplicates removed (%)
51.7
Number of peaks
1173 (qval < 1E-05)
hg38
Number of total reads
55983868
Reads aligned (%)
23.4
Duplicates removed (%)
50.6
Number of peaks
662 (qval < 1E-05)
Base call quality data from
DBCLS SRA