SRX045434
GSM678268: VDR ChIP-seq vehicle

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells
cell line
THP-1
treatment
unstimulated
antibody
VDR

Sequenced DNA Library

library_name
GSM678268: VDR ChIP-seq vehicle
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
55983868
Reads aligned (%)
22.5
Duplicates removed (%)
51.7
Number of peaks
1173 (qval < 1E-05)

hg38

Number of total reads
55983868
Reads aligned (%)
23.4
Duplicates removed (%)
50.6
Number of peaks
662 (qval < 1E-05)

Base call quality data from DBCLS SRA