Curated Sample Data


Genome
ce10
Antigen Class
TFs and others
Antigen
ceh-30
Cell type Class
Embryo
Cell type
Late embryo

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Snyder_CEH-30_GFP_lemb_rep1 extraction1_seq1 channel_1
strain
OP120(made_by : R Waterston description : This strain's transgene was constructed by Mihail Sarov at the Max Planck Institute for Cell Biology in Tubiginen using Tony Hyman's recombineering pipeline. The resulting plasmid was used for biolistic transformation of an unc-119(ed3) strain. The CEH-30::EGFP fusion protein is expressed in the correct ceh-30 spatio-temporal expression pattern. This strain was used for ChIP-seq experiments to map the in vivo binding sites for the CEH-30 transcription factor. tags : GFP::3xFlag mutagen : Bombard outcross : 3 genotype : unc119(ed3);wgIs120(ceh-30::TY1 EGFP FLAG;unc119) official name : OP120 )
developmental stage
late embryo
genotype
unc119(ed3);wgIs120(ceh-30::TY1 EGFP FLAG;unc119)
Sex
Hermaphrodite

Metadata from Sequence Read Archive

Library Description


library_name
GSM677683: Snyder_CEH-30_GFP_lemb_rep1 extraction1_seq1 aliquote 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer

External Database Query

Logs in read processing pipeline


Number of total reads
3242196
Reads aligned (%)
98.3
Duplicates removed (%)
2.9
Number of peaks
298 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA