SRX042343
GSM675074: HCC-1428,LTED ER-ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
HCC1428-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
HCC-1428/LTED cells
cell type
HCC-1428
chip antibody
Mouse-anti-ER*
vendor
Neomarkers, clone Ab-10 (TE111.5D11)
chip antibody
Rabbit-anti-ER*

Sequenced DNA Library

library_name
GSM675074: HCC-1428,LTED_ER-ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
28485756
Reads aligned (%)
96.5
Duplicates removed (%)
7.7
Number of peaks
965 (qval < 1E-05)

hg38

Number of total reads
28485756
Reads aligned (%)
97.3
Duplicates removed (%)
6.5
Number of peaks
723 (qval < 1E-05)

Base call quality data from DBCLS SRA