SRX041394
GSM669545: E0-12 Hr4 GFP ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Hr4

Cell type

Cell type Class
Embryo
Cell type
0-12h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
E0-12
developmental stage
E0-12
antibody name
Hr4_GFP
fly type
transgenic
manufacturer
White Lab
catalog
N/A

Sequenced DNA Library

library_name
GSM669545: E0-12_Hr4_GFP_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
46664702
Reads aligned (%)
94.5
Duplicates removed (%)
33.4
Number of peaks
7606 (qval < 1E-05)

dm3

Number of total reads
46664702
Reads aligned (%)
95.1
Duplicates removed (%)
32.2
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA