SRX041381
GSM669474: EcR mF3d GFP ChIPSeq 1 and 2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Adult
Cell type
Adult female
NA
NA

Attributes by original data submitter

Sample

source_name
EcR_mF3d
developmental stage
EcR_mF3d
fly type
transgenic
antibody name
GFP
manufacturer
White Lab
catalog
N/A

Sequenced DNA Library

library_name
GSM669474: EcR_mF3d_GFP_ChIPSeq_1 and 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
53330249
Reads aligned (%)
93.7
Duplicates removed (%)
47.4
Number of peaks
6449 (qval < 1E-05)

dm3

Number of total reads
53330249
Reads aligned (%)
93.8
Duplicates removed (%)
46.2
Number of peaks
6221 (qval < 1E-05)

Base call quality data from DBCLS SRA