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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rest
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX041307
GSM671103: Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rest
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
Embryonic Stem Cells (ESCs) wildtype
strain
129Sv-C57Bl/6
genotype
wild type
cell type
Embryonic Stem Cells (ESCs)
antibody
anti-REST (Santa Cruz, #H-290)
Sequenced DNA Library
library_name
GSM671103: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
41871781
Reads aligned (%)
87.2
Duplicates removed (%)
18.2
Number of peaks
493 (qval < 1E-05)
mm9
Number of total reads
41871781
Reads aligned (%)
87.0
Duplicates removed (%)
18.2
Number of peaks
548 (qval < 1E-05)
Base call quality data from
DBCLS SRA