SRX041305
GSM671101: NP RESTko H3K27me3 biological replicate a

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuronal Progenitor (NP) Cells RESTko
strain
RESTko (Black Agouti 129)
genotype
RESTko
cell type
Neuronal Progenitor (NP) Cells
antibody
anti-H3K27me3 (Millipore,#07-449)

Sequenced DNA Library

library_name
GSM671101: NP_RESTko_H3K27me3_biological_replicate_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10217788
Reads aligned (%)
91.1
Duplicates removed (%)
30.4
Number of peaks
701 (qval < 1E-05)

mm9

Number of total reads
10217788
Reads aligned (%)
91.0
Duplicates removed (%)
30.6
Number of peaks
716 (qval < 1E-05)

Base call quality data from DBCLS SRA