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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rest
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX041304
GSM671100: NP REST biological replicate c
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rest
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
Neuronal Progenitor (NP) Cells wildtype
strain
129Sv-C57Bl/6
genotype
wild type
cell type
Neuronal Progenitor (NP) Cells
antibody
anti-REST (Santa Cruz, #H-290)
Sequenced DNA Library
library_name
GSM671100: NP_REST_biological_replicate_c
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29808768
Reads aligned (%)
78.8
Duplicates removed (%)
31.2
Number of peaks
1625 (qval < 1E-05)
mm9
Number of total reads
29808768
Reads aligned (%)
78.6
Duplicates removed (%)
31.2
Number of peaks
1642 (qval < 1E-05)
Base call quality data from
DBCLS SRA