SRX041303
GSM671099: NP REST biological replicate b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rest

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Neuronal Progenitor (NP) Cells wildtype
strain
129Sv-C57Bl/6
genotype
wild type
cell type
Neuronal Progenitor (NP) Cells
antibody
anti-REST (Santa Cruz, #H-290)

Sequenced DNA Library

library_name
GSM671099: NP_REST_biological_replicate_b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14855202
Reads aligned (%)
90.2
Duplicates removed (%)
54.6
Number of peaks
1316 (qval < 1E-05)

mm9

Number of total reads
14855202
Reads aligned (%)
90.0
Duplicates removed (%)
54.9
Number of peaks
1343 (qval < 1E-05)

Base call quality data from DBCLS SRA