SRX040954
ChIP-Seq analysis of H3K4me1 in human Cultured CD34 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

DONOR_HEALTH_STATUS
NA
MOLECULE
genomic DNA
DISEASE
none
MARKERS
CD34+
PASSAGE_IF_EXPANDED
short term
CELL_TYPE
cultured CD34
DONOR_ETHNICITY
NA
DONOR_SEX
Unknown
BIOMATERIAL_TYPE
Primary Cell
DONOR_ID
123
BIOMATERIAL_PROVIDER
FHCRC
DONOR_AGE
NA
sample_term_id
CL_0001059

Sequenced DNA Library

library_name
Lib:RI:20101012:01--ChIP:MA:20100927:01:CD34 expanded:H3K4Me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38377305
Reads aligned (%)
94.0
Duplicates removed (%)
14.4
Number of peaks
23698 (qval < 1E-05)

hg19

Number of total reads
38377305
Reads aligned (%)
93.6
Duplicates removed (%)
15.0
Number of peaks
23418 (qval < 1E-05)

Base call quality data from DBCLS SRA