SRX040615
GSM668386: trik4 r2 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA

Attributes by original data submitter

Sample

source_name
wing imaginal discs, LID RNAi knock-down, H3K4me3 ChIP
genotype
LID RNAi
developmental stage
third instar larvae
tissue
wing imaginal discs
chip antibody
H3K4me3
antibody vendor
Abcam
antibody catalog number
ab8580
sequencing_date
Oct_2010

Sequenced DNA Library

library_name
GSM668386: trik4_r2_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
25688390
Reads aligned (%)
90.6
Duplicates removed (%)
69.1
Number of peaks
9277 (qval < 1E-05)

dm3

Number of total reads
25688390
Reads aligned (%)
90.9
Duplicates removed (%)
68.7
Number of peaks
9759 (qval < 1E-05)

Base call quality data from DBCLS SRA