Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LIN9

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa cell line
cell line
HeLa cell line
chip antibody
LIN9

Sequenced DNA Library

library_name
GSM665907: LIN9_ChIPSeq_HeLa_Rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
20468542
Reads aligned (%)
87.2
Duplicates removed (%)
8.5
Number of peaks
1370 (qval < 1E-05)

hg38

Number of total reads
20468542
Reads aligned (%)
89.2
Duplicates removed (%)
7.1
Number of peaks
1267 (qval < 1E-05)

Base call quality data from DBCLS SRA