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Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: FOXA1
wikigenes
PDBj
CellType: T-47D
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX039145
GSM659795: FOXA1 sequencing in estradiol (E2) treated T47D cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
FOXA1
Cell type
Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal
Attributes by original data submitter
Sample
source_name
T47D breast cancer cells
cell type
T47D breast cancer cells, E2 treated
chip antibody
FOXA1 - Cat# AB4124, Chemicon
Sequenced DNA Library
library_name
GSM659795: FOXA1 sequencing in estradiol (E2) treated T47D cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
15015280
Reads aligned (%)
91.3
Duplicates removed (%)
5.8
Number of peaks
4201 (qval < 1E-05)
hg38
Number of total reads
15015280
Reads aligned (%)
92.8
Duplicates removed (%)
5.0
Number of peaks
4041 (qval < 1E-05)
Base call quality data from
DBCLS SRA