SRX039145
GSM659795: FOXA1 sequencing in estradiol (E2) treated T47D cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell type
T47D breast cancer cells, E2 treated
chip antibody
FOXA1 - Cat# AB4124, Chemicon

Sequenced DNA Library

library_name
GSM659795: FOXA1 sequencing in estradiol (E2) treated T47D cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
15015280
Reads aligned (%)
91.3
Duplicates removed (%)
5.8
Number of peaks
4201 (qval < 1E-05)

hg38

Number of total reads
15015280
Reads aligned (%)
92.8
Duplicates removed (%)
5.0
Number of peaks
4041 (qval < 1E-05)

Base call quality data from DBCLS SRA