SRX039144
GSM659794: H3K4me1 sequencing in non-treated (DMSO as vehicle) T47D cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell type
T47D breast cancer cells, non-treated
chip antibody
H3K4me1 - Cat# ab8895, Abcam

Sequenced DNA Library

library_name
GSM659794: H3K4me1 sequencing in non-treated (DMSO as vehicle) T47D cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20858642
Reads aligned (%)
99.0
Duplicates removed (%)
1.6
Number of peaks
937 (qval < 1E-05)

hg19

Number of total reads
20858642
Reads aligned (%)
98.4
Duplicates removed (%)
2.3
Number of peaks
1027 (qval < 1E-05)

Base call quality data from DBCLS SRA