SRX038921
GSM656316: ChIP-Seq for H3K27me3 in MEF

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Mouse embryonic fibroblasts, H3K27me3 ChIP
cell type
mouse embryronic fibroblast (MEF)
chip antibody
H3K27me3
antibody vendor
Abcam
antibody catalog number
AB6002
antibody lot number
471901

Sequenced DNA Library

library_name
GSM656316: ChIP-Seq for H3K27me3 in MEF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14379281
Reads aligned (%)
84.5
Duplicates removed (%)
7.2
Number of peaks
1250 (qval < 1E-05)

mm9

Number of total reads
14379281
Reads aligned (%)
84.4
Duplicates removed (%)
7.3
Number of peaks
1257 (qval < 1E-05)

Base call quality data from DBCLS SRA