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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX038740
GSM588569: H3K4me1 sequencing in non-treated (DMSO as vehicle) MCF-7 cells
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
MCF-7 breast cancer cells
cell line
MCF-7
cell type
breast cancer cells
agent
DMSO
chip antibody
H3K4me1
antibody catalog number
ab8895
antibody manufacturer
Abcam
Sequenced DNA Library
library_name
GSM588569: H3K4me1 sequencing in non-treated (DMSO as vehicle) MCF-7 cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25909868
Reads aligned (%)
65.2
Duplicates removed (%)
11.0
Number of peaks
10978 (qval < 1E-05)
hg19
Number of total reads
25909868
Reads aligned (%)
65.1
Duplicates removed (%)
11.2
Number of peaks
11000 (qval < 1E-05)
Base call quality data from
DBCLS SRA