Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
NHLF
Tissue
lung
Lineage
endoderm
Description
lung fibroblasts

Attributes by original data submitter

Sample

source_name
cultured NHLF cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
NHLF

Sequenced DNA Library

library_name
GSM646475: NHLF_CTCF_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
21621356
Reads aligned (%)
75.6
Duplicates removed (%)
10.9
Number of peaks
35142 (qval < 1E-05)

hg19

Number of total reads
21621356
Reads aligned (%)
75.1
Duplicates removed (%)
11.8
Number of peaks
35114 (qval < 1E-05)

Base call quality data from DBCLS SRA