SRX038653
GSM646463: NHEK H3K4me1 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
cultured NHEK cells
chip antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
cell line
NHEK

Sequenced DNA Library

library_name
GSM646463: NHEK_H3K4me1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24164115
Reads aligned (%)
54.5
Duplicates removed (%)
2.2
Number of peaks
28662 (qval < 1E-05)

hg19

Number of total reads
24164115
Reads aligned (%)
54.4
Duplicates removed (%)
2.3
Number of peaks
28516 (qval < 1E-05)

Base call quality data from DBCLS SRA