SRX038651
GSM646461: NHEK H3K36me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Epidermis
Cell type
NHEK
Tissue
skin
Lineage
ectoderm
Description
epidermal keratinocytes

Attributes by original data submitter

Sample

source_name
cultured NHEK cells
chip antibody
H3K36me3
antibody manufacturer
Abcam
antibody catalog number
ab9050
cell line
NHEK

Sequenced DNA Library

library_name
GSM646461: NHEK_H3K36me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22547276
Reads aligned (%)
51.1
Duplicates removed (%)
1.7
Number of peaks
125 (qval < 1E-05)

hg19

Number of total reads
22547276
Reads aligned (%)
50.7
Duplicates removed (%)
2.1
Number of peaks
135 (qval < 1E-05)

Base call quality data from DBCLS SRA