SRX038630
GSM646440: K562 H3K4me1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
H3K4me1
antibody manufacturer
Abcam
antibody catalog number
ab8895
cell line
K562

Sequenced DNA Library

library_name
GSM646440: K562_H3K4me1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36910466
Reads aligned (%)
40.9
Duplicates removed (%)
3.8
Number of peaks
8541 (qval < 1E-05)

hg19

Number of total reads
36910466
Reads aligned (%)
40.7
Duplicates removed (%)
4.0
Number of peaks
8498 (qval < 1E-05)

Base call quality data from DBCLS SRA