SRX038627
GSM646437: K562 H3K27me3 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
cultured K562 cells
chip antibody
H3K27me3
antibody manufacturer
Millipore
antibody catalog number
07-449
cell line
K562

Sequenced DNA Library

library_name
GSM646437: K562_H3K27me3_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22830589
Reads aligned (%)
58.4
Duplicates removed (%)
26.0
Number of peaks
624 (qval < 1E-05)

hg19

Number of total reads
22830589
Reads aligned (%)
58.0
Duplicates removed (%)
26.6
Number of peaks
616 (qval < 1E-05)

Base call quality data from DBCLS SRA