SRX038619
GSM646429: Huvec H4K20me1 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Cardiovascular
Cell type
HUVEC
Primary Tissue
Umbilical Cord
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HUVEC cells
chip antibody
H4K20me1
antibody manufacturer
Abcam
antibody catalog number
ab9051
cell line
HUVEC

Sequenced DNA Library

library_name
GSM646429: Huvec_H4K20me1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18693146
Reads aligned (%)
61.0
Duplicates removed (%)
1.6
Number of peaks
150 (qval < 1E-05)

hg19

Number of total reads
18693146
Reads aligned (%)
60.4
Duplicates removed (%)
2.4
Number of peaks
534 (qval < 1E-05)

Base call quality data from DBCLS SRA