SRX038596
GSM646406: HSMM H3K9ac rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
cultured HSMM cells
chip antibody
H3K9ac
antibody manufacturer
Abcam
antibody catalog number
ab4441
cell line
HSMM

Sequenced DNA Library

library_name
GSM646406: HSMM_H3K9ac_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13773975
Reads aligned (%)
82.6
Duplicates removed (%)
17.1
Number of peaks
10805 (qval < 1E-05)

hg19

Number of total reads
13773975
Reads aligned (%)
82.0
Duplicates removed (%)
17.8
Number of peaks
10789 (qval < 1E-05)

Base call quality data from DBCLS SRA