Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
CTCF
Cell type Class
Muscle
Cell type
HSMM

Cell type information


Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by Original Data Submitter


source_name
cultured HSMM cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
HSMM

Metadata from Sequence Read Archive

Library Description


library_name
GSM646392: HSMM_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
17766715
Reads aligned (%)
79.1
Duplicates removed (%)
21.2
Number of peaks
32752 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA