SRX038582
GSM646392: HSMM CTCF rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Muscle
Cell type
HSMM
Tissue
muscle
Lineage
mesoderm
Description
skeletal muscle myoblasts

Attributes by original data submitter

Sample

source_name
cultured HSMM cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
HSMM

Sequenced DNA Library

library_name
GSM646392: HSMM_CTCF_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17766715
Reads aligned (%)
79.8
Duplicates removed (%)
20.3
Number of peaks
32835 (qval < 1E-05)

hg19

Number of total reads
17766715
Reads aligned (%)
79.1
Duplicates removed (%)
21.2
Number of peaks
32752 (qval < 1E-05)

Base call quality data from DBCLS SRA