SRX038578
GSM646388: HMEC H4K20me1 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
cultured HMEC cells
chip antibody
H4K20me1
antibody manufacturer
Abcam
antibody catalog number
ab9051
cell line
HMEC

Sequenced DNA Library

library_name
GSM646388: HMEC_H4K20me1_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40264682
Reads aligned (%)
49.0
Duplicates removed (%)
4.6
Number of peaks
1060 (qval < 1E-05)

hg19

Number of total reads
40264682
Reads aligned (%)
48.5
Duplicates removed (%)
5.5
Number of peaks
1244 (qval < 1E-05)

Base call quality data from DBCLS SRA