SRX038559
GSM646369: HepG2 H4K20me1 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H4K20me1

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
cultured HepG2 cells
chip antibody
H4K20me1
antibody manufacturer
Abcam
antibody catalog number
ab9051
cell line
HepG2

Sequenced DNA Library

library_name
GSM646369: HepG2_H4K20me1_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24878020
Reads aligned (%)
85.0
Duplicates removed (%)
22.1
Number of peaks
232 (qval < 1E-05)

hg19

Number of total reads
24878020
Reads aligned (%)
84.5
Duplicates removed (%)
22.8
Number of peaks
265 (qval < 1E-05)

Base call quality data from DBCLS SRA