SRX038553
GSM646363: HepG2 H3K4me2 rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
cultured HepG2 cells
chip antibody
H3K4me2
antibody manufacturer
Abcam
antibody catalog number
ab7766
cell line
HepG2

Sequenced DNA Library

library_name
GSM646363: HepG2_H3K4me2_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15293622
Reads aligned (%)
94.0
Duplicates removed (%)
4.1
Number of peaks
51192 (qval < 1E-05)

hg19

Number of total reads
15293622
Reads aligned (%)
93.8
Duplicates removed (%)
4.2
Number of peaks
51044 (qval < 1E-05)

Base call quality data from DBCLS SRA