SRX038525
GSM646335: H1 CTCF rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
cultured H1 cells
chip antibody
CTCF
antibody manufacturer
Millipore
antibody catalog number
07-729
cell line
H1

Sequenced DNA Library

library_name
GSM646335: H1_CTCF_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18502592
Reads aligned (%)
87.4
Duplicates removed (%)
12.3
Number of peaks
61817 (qval < 1E-05)

hg19

Number of total reads
18502592
Reads aligned (%)
87.0
Duplicates removed (%)
12.9
Number of peaks
61672 (qval < 1E-05)

Base call quality data from DBCLS SRA